Ray, a few thoughts:
1. Don Quixote believed his Ends-Ways-Means to be quite reasonable and rational. A warning of his saga is that sometimes others can see what we ourselves cannot.
2. The US believes that exercise of control over who/how Afghanistan is governed is essential to the denial of AQ sanctuary in the region; and that specific actions by Pakistan are essential to that end. Inappropriate foreign influence (as assessed by the affected populaces, not as intended by the foreign power), particularly when coupled with physical occupation and actions (but policy alone can be enough), usually triggers the "resistance response" among those affected populaces. We will know when we have tailored our policies and approaches to more appropriate Ends-Ways-Means when the resistance fades.
This is not just a post 9/11 effect in AFPAK; it is in my opinion the beating heart of the entire "war on terror" as US approaches to the Greater Middle East grew increasingly dated and inappropriate following the fall of the Soviet threat to the region. Our nearly "virtual presence" triggering a very real resistance among those populaces with growing revolutionary pressures internal to their respective states, and a belief inflamed by AQ that success with those revolutionary nationalist issues can only be attained once the resistance against inappropriate Western influence is won.
3. India does not need real estate in Afghanistan to make Pakistan feel enveloped, merely political influence and the physical presence of security forces. The US is so desperate for assistance on this mission that we seem blind to dangers of facilitating an Afghanistan-Indian relationship. The Northern Alliance, on the other hand, is fully aware that this is their next best solution to keeping Taliban influence out once the US withdraws. But then the Northern Alliance does not much care if India and Pakistan go to war because of it, so long as they get what they want from the bargain.
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