ICG, 16 Jun 08: Indonesia: Communal Tensions in Papua
....The potential for communal conflict is high in Papua because both sides consider themselves aggrieved. Indigenous Christians feel threatened by ongoing Muslim migration; Muslim migrants feel democracy may be leading to a tyranny of the majority, where in the long term they will face discrimination or even expulsion. Even though there are significant rifts and factions in both communities, especially over competing nationalisms (Indonesian vs. Papuan), the developments in Manokwari and Kaimana may be a sign of more clashes to come.....
Complete 35 page report at the link.