Religious beliefs may seem rational but they lead to actions based on commandments from non-human actors or benefits in the next life. I am not just talking about the current struggles with Muslim extremists but also much christian history. Therefore, it is possible that overwelming military force or advantage may not deter the believers from fighting and continuing that fight ad nausium. There are also the combination of religious and political activities as in the thirty year war. The emotional component blunts traditional military advantage unless you are willing to go as far as eliminating the true believers - something akin to genocide - or at least that is how I am seeing it.
They may rationalize their emotions but it is the emotion that exists first and it is the heart of "why" they fight which is where I want to go. You either start with an emotional struggle, as in the first intifada, or you must entreat the passion of the people, as was done in the First World War. I doubt you would have found Palestinians and Israelis playing soccer on the Eid holiday. Where the conflict is based on emotions I would suggest that the settlement of the struggle must address that emotional basis - must satisfy it - or the struggle will just continue.
I also consider struggles of identity as emotional.
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