I'm kinda pessimistic about Indonesias hand in the GWOT. There was a report on this a few days back here in Australia. Take the report with a grain of salt. The liberal Islamist Wahid is going senile methinks, but the Indonesian police chief is spot on. POLRI (Indon Police) is incompetent and corrupt. The ICG released a telling report two years back on how POLRI members blatantly paraded a group through the town thereby stirring up violence. I think it might have been this report. The links between the TNI (Indon military) and militia groups is also well known. Seeing as though some of these militia are muslim oriented it kinda raises the question as to what extent the TNI are cracking down on extremists and to what extent they are interacting with them for their own purposes. So these social networks might have to be investigated and curtailed.
It's in my own view that a lot of the military members at the lower levels can get out of control. Because the TNI works right down to a village level, whereby members are actually embedded within the political structure of small communities, recklessness can get out of hand without any sort of authoritative oversight. Also considering the massive command and logistical strains over the archipelago which can leave military members isolated like a modern day Colonel Kurtz (just kidding, but you get my point on the ties between geographic isolation and information isolation).
On the political front the conservative political Islamists are doing an excellent job at separating themselves from the radical Islamists. This was seen in the 2004 elections. If anything the best warning signal for growing strife within Indonesia would be to watch their political parties and see which are starting to be influenced by the jihadi zeitgeist. Because the two can be closely intertwined it could pop out of nowhere. One way to weaken the extremist Jihadi political aspirations would be to support and strengthen the liberal Islamist movements within Indonesia, as they are an effective deterrent.
On the media front, if anyone peruses the Indonesian news on this board you'll be aware that corruption is the new black within the Indonesian media (that and their constant love of the paranormal, something that Ralph Peters would probably have something to say about in regards to bad information). So I would expect some of this news to either be: spotlighted for the international community on the corrupt links between terrorism and the military; or, for that news to be blowtorched by the government and military.
Also, in regard to the International Crisis Group ... they should be applauded for their work on gathering open source information on Jemaah Islamiyah.
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