A very short review by a Singapore think tank of recent developments:
The recent killings of militants belonging to the so-called East Indonesia Mujahidin Commandos point not to the rise of a brand new militant network, but rather, yet another “mutation” of the old Darul Islam separatist movement or “super-organism.”
Link:http://www.rsis.edu.sg/publications/...SIS0082013.pdf

One does wonder how they reached this conclusion, first the apparent situation, followed by a frankly bizarre suggestion (edited citation):
Finally, the Indonesian police must recognise that excessive use of force actually strengthens the hand of Santoso and his ilk. Granted, the police have suffered casualties themselves at the hands of the militants in recent years. Thus some police officers apparently maintain that “the best kind of deradicalisation is through killing (such) people”. Such an attitude however is counter-productive: worryingly, human rights observers complain that heavy-handed Densus 88 tactics are “driving militancy”.

Perhaps all police units should explore more systematically the calibrated use of so-called less-lethal weaponry, such as for instance acoustic and directed energy weapons, with Western assistance.