Well, the blow could be softened by arguing that what they are really helping the military to do in Iraq is NOT kill or detain the WRONG people. Without the focus their knowledge can bring to the table, force must be applied in a far more blunt manner, causing more unintended collateral damage. Furthermore, it seems that the collateral damage issues, not the failure to kill the right people, has done the greater harm to the effort in Iraq.
The morality of the death a sniper brings can be debated, but it is certainly better than the indiscriminate death and destruction of a couple of two thousand pound bombs. While this sort of moral subjectivity has its repulsive implications, what is truly important is that the former action gets you out of the killing/fighting phase much sooner (because you're not creating more enemies), which is an indisputable good.
As with many things associated with war, it is often the marketing (public relations, propaganda, etc.) that makes ultimate difference in effectiveness. Given the philosophy the underpins modern anthropology, it is obvious why the idea that their knowledge being used as a tool to deliver force chafes. But if the message is that their knowledge is being used to minimize the use of force, well that might make it all a bit easier for them.
Of course, there is something about this argument that makes me feel distinctly evil.
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